The Power of Connectivity…in Diseases

In this analysis, we delve into the interplay of regional connectivity in Montreal and discuss how this is highly relevant to public health. This project was completed in R.


Introduction to Connectivity Using Graph Theory

Graph-based connectivity offers a unique perspective for visualizing and analyzing the network of connections within a cityscape. This method provides critical insights that traditional data analysis techniques often miss. By examining how each area in Montreal interacts with others, we can uncover patterns of connectivity that influence public health, emergency responses, and resource management.

Importance for Public Health

In the realm of public health, the interconnectedness of different regions is pivotal. It affects various aspects of health management, from disease control to the allocation of resources and emergency planning. This project delves into Montreal’s Forward Sortation Areas (FSAs) using advanced connectivity measures to model potential interactions among people, resources, and diseases.

Some key areas include:

Rapid Response and Community Resilience

In emergencies like epidemics or natural disasters, rapid response is crucial. Knowing how different areas are connected helps model disease spread and impacts, leading to more efficient responses. Additionally, connectivity data can pinpoint isolated or under-connected communities, guiding efforts to boost resilience against health crises.

A Multidimensional Approach to Public Health

By integrating connectivity with socio-economic and health data, public health officials gain a comprehensive understanding of both challenges and opportunities for intervention. This approach enhances both the immediacy of responses and the long-term planning necessary for developing healthier, more resilient communities. Another project that I posted builds on this work some more.


Explore the Source Code

For those interested in further exploring the code and methodologies used in this analysis, please visit the GitHub repository: Connectivity Matrices Montreal.

Setting Up for Success

Before diving into the connectivity analyses, it’s essential to prepare by setting up the necessary tools and libraries for spatial data manipulation and visualization.

library(maptools)
library(spdep)
library(classInt)
library(RColorBrewer)
library(igraph)
library(ggplot2)

Connectivity for Disease Spread Modelling

Triangulation (Delaunay Triangulation)

One effective method used is triangulation, specifically Delaunay Triangulation. This technique connects each geographic area, such as FSAs, to its nearest neighbors forming a network of non-overlapping triangles. It’s particularly useful for modeling diseases that spread through direct contact or over short distances, helping to identify potential outbreak clusters and guiding public health interventions.

Here’s how it is used in the script:

fsa.nb.tri = tri2nb(coordinates(fsa.shp), row.names=fsa.shp@data$FSA)

Connectivity plot by Delaunay Triangulation.

Nearest Neighbors (k-Nearest Neighbors)

The k-Nearest Neighbors method defines connectivity based on the proximity of the closest ‘k’ points for each region, cutting across physical barriers. This flexibility allows for adjustments either by changing the number of neighbors or by setting a fixed radius. Particularly in urban settings, where human movements like commuting heavily influence the spread of diseases, this method provides invaluable insights into potential paths of transmission that transcend geographical limits. It’s an essential tool in urban epidemiology, providing a nuanced view of how diseases can spread via public transportation systems and major commuter routes.

Here’s how it appears in the script:

k1 = knn2nb(knearneigh(coordinates(fsa.shp)))
max.distance = max(unlist(nbdists(k1, coordinates(fsa.shp))))

fsa.nb.knn = dnearneigh(coordinates(fsa.shp), 0, max.distance, fsa.shp@data$FSA)

Connectivity plot by k-Nearest Neighbours.

Method for Resource Allocation Modelling

Shared Borders (Queen Contiguity)

Another methodological approach is Queen Contiguity, which connects regions that share a border or vertex. This stringent method is particularly useful for planning and allocating physical resources like hospitals and emergency services. By understanding which areas are directly adjacent, planners can optimize resource locations to ensure equitable access, especially crucial during emergencies. Used frequently in geographic and environmental studies, Queen Contiguity provides a precise framework for scenarios where effects such as pollution or disease spread are confined to neighboring areas.

fsa.nb.poly = poly2nb(fsa.polys, queen=FALSE)

Connectivity plot by queen contiguity method.

Challenges and Considerations

Despite its benefits, graph-based connectivity analysis introduces several complexities:

  • Data Complexity: Integrating varied data sources into a unified graph demands sophisticated data processing and effective management.
  • Scalability: Analyzing extensive urban areas creates large, complex networks that require significant computational resources.
  • Dynamic Data: As urban landscapes evolve with new infrastructure, policies, and demographic shifts, maintaining an up-to-date connectivity model is crucial to reflect these changes accurately.

Conclusion

Graph-based connectivity analysis offers public health professionals a powerful tool for tackling the complex, dynamic challenges of urban health. By mapping how different areas of a city are interconnected, it empowers policymakers and planners with the insights needed to make informed decisions. This approach not only enhances immediate public health responses but also aids in the strategic planning and implementation of long-term health initiatives, ensuring communities are better prepared and more resilient to future health challenges.

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